openmsimodel
stable
Intro to OpenMSImodel:
Introduction
Getting Started
Working with OpenMSIModel:
Structure
API reference/dev info:
API reference
CI testing
openmsimodel
Index
Edit on GitHub
Index
A
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B
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D
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E
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F
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G
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H
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I
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L
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M
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O
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P
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R
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S
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T
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U
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W
A
add_ingredient() (openmsimodel.subworkflow.process_block.ProcessBlock method)
add_material() (openmsimodel.subworkflow.process_block.ProcessBlock method)
add_measurement() (openmsimodel.subworkflow.process_block.ProcessBlock method)
add_process() (openmsimodel.subworkflow.process_block.ProcessBlock method)
ARGUMENT_PARSER_TYPE (openmsimodel.db.open_db.OpenDB attribute)
(openmsimodel.graph.open_graph.OpenGraph attribute)
(openmsimodel.workflow.workflow.Workflow attribute)
B
BaseElement (class in openmsimodel.entity.base.base_element)
build() (openmsimodel.workflow.workflow.Workflow method)
build_graph() (openmsimodel.graph.open_graph.OpenGraph method)
D
dumps() (openmsimodel.workflow.workflow.Workflow method)
E
extract_subgraph() (openmsimodel.graph.open_graph.OpenGraph class method)
F
from_() (openmsimodel.subworkflow.subworkflow.Subworkflow class method)
from_spec_or_run() (openmsimodel.entity.base.ingredient.Ingredient class method)
(openmsimodel.entity.base.material.Material class method)
(openmsimodel.entity.base.measurement.Measurement class method)
(openmsimodel.entity.base.process.Process class method)
G
get_argument_parser() (openmsimodel.graph.open_graph.OpenGraph class method)
get_command_line_arguments() (openmsimodel.db.open_db.OpenDB class method)
(openmsimodel.graph.open_graph.OpenGraph class method)
(openmsimodel.subworkflow.subworkflow.Subworkflow class method)
(openmsimodel.workflow.workflow.Workflow class method)
get_filelinks_dict() (openmsimodel.entity.base.base_element.BaseElement method)
get_material() (openmsimodel.entity.base.measurement.Measurement method)
get_process_dict() (openmsimodel.entity.base.material.Material method)
get_properties_and_conditions_dict() (openmsimodel.entity.base.material.Material method)
get_properties_dict() (openmsimodel.entity.base.measurement.Measurement method)
get_sample_type() (openmsimodel.entity.base.material.Material method)
get_tags_dict() (openmsimodel.entity.base.base_element.BaseElement method)
H
handle_gemd_obj() (openmsimodel.graph.open_graph.OpenGraph method)
I
Ingredient (class in openmsimodel.entity.base.ingredient)
L
link_posterior() (openmsimodel.subworkflow.process_block.ProcessBlock method)
link_prior() (openmsimodel.subworkflow.process_block.ProcessBlock method)
link_within() (openmsimodel.subworkflow.process_block.ProcessBlock method)
list_queries() (openmsimodel.db.open_db.OpenDB method)
loads() (openmsimodel.workflow.workflow.Workflow method)
local_out() (openmsimodel.workflow.workflow.Workflow method)
M
map_to_graphviz() (openmsimodel.graph.open_graph.OpenGraph class method)
Material (class in openmsimodel.entity.base.material)
Measurement (class in openmsimodel.entity.base.measurement)
O
OpenDB (class in openmsimodel.db.open_db)
OpenGraph (class in openmsimodel.graph.open_graph)
P
Process (class in openmsimodel.entity.base.process)
ProcessBlock (class in openmsimodel.subworkflow.process_block)
R
record_query_results() (openmsimodel.db.open_db.OpenDB method)
remove_filelinks() (openmsimodel.entity.base.base_element.BaseElement method)
remove_properties() (openmsimodel.entity.base.material.Material method)
(openmsimodel.entity.base.measurement.Measurement method)
remove_tags() (openmsimodel.entity.base.base_element.BaseElement method)
return_uuid() (openmsimodel.graph.open_graph.OpenGraph class method)
run (openmsimodel.entity.base.base_element.BaseElement property)
(openmsimodel.entity.base.ingredient.Ingredient property)
(openmsimodel.entity.base.material.Material property)
(openmsimodel.entity.base.measurement.Measurement property)
(openmsimodel.entity.base.process.Process property)
run_from_command_line() (openmsimodel.db.open_db.OpenDB class method)
(openmsimodel.graph.open_graph.OpenGraph class method)
(openmsimodel.subworkflow.subworkflow.Subworkflow class method)
(openmsimodel.workflow.workflow.Workflow class method)
S
save_graph() (openmsimodel.graph.open_graph.OpenGraph class method)
set_material() (openmsimodel.entity.base.measurement.Measurement method)
set_process() (openmsimodel.entity.base.material.Material method)
set_sample_type() (openmsimodel.entity.base.material.Material method)
setup() (openmsimodel.db.open_db.OpenDB method)
slice_subgraph() (openmsimodel.graph.open_graph.OpenGraph class method)
spec (openmsimodel.entity.base.base_element.BaseElement property)
(openmsimodel.entity.base.ingredient.Ingredient property)
(openmsimodel.entity.base.material.Material property)
(openmsimodel.entity.base.measurement.Measurement property)
(openmsimodel.entity.base.process.Process property)
StoresConfig (class in openmsimodel.stores.gemd_template_store)
Subworkflow (class in openmsimodel.subworkflow.subworkflow)
T
thin_dumps() (openmsimodel.workflow.workflow.Workflow method)
thin_loads() (openmsimodel.workflow.workflow.Workflow method)
U
update_filelinks() (openmsimodel.entity.base.base_element.BaseElement method)
update_properties() (openmsimodel.entity.base.measurement.Measurement method)
update_properties_and_conditions() (openmsimodel.entity.base.material.Material method)
update_tags() (openmsimodel.entity.base.base_element.BaseElement method)
W
Workflow (class in openmsimodel.workflow.workflow)